Review

Crosstalk between epigenetic modification and circRNA in colorectal cancer: recent advances

  • Tian PENG ,
  • Leiming XU
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  • Department of Gastroenterology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200082, China
XU Leiming, E-mail: xuleiming@xinhuamed.com.cn.

Received date: 2022-08-14

  Accepted date: 2023-02-20

  Online published: 2023-02-28

Supported by

National Natural Science Foundation of China(82172737)

Abstract

Colorectal cancer (CRC) is generally regarded as the third frequent malignancy worldwide, while current diagnosis and treatment of the disease are limited. The previous studies of CRC revealed that epigenetic modification plays a crucial role in the progression of CRC. Epigenetic modification is identified as heritable changes in gene functions that occur without changing the DNA sequence, resulting in cells with similar DNA eventually developing into different types with different functions, which encompasses DNA/RNA methylation, histone modification, and non-coding RNA regulation. Circular RNA (circRNA), a kind of non-coding RNA that forms a covalently closed loop, is widely present in various cells which drive initiation and progression of cancers through multiple pathways. The emerging data show that epigenetic modification may affect the biological functions of circRNA, while circRNA can also participate in the progression of CRC by targeting molecules related to epigenetic modification. N6-methyladenosine (m6A) has been found to directly promote production, translation, and functions of circRNA on the one hand, and interact with circRNA on the other hand, thereby altering onset, progression, and metastasis of the disease. DNA methylation and histone modification have also been observed to have potential interaction with circRNA. This review provides a brief overview about the association between current epigenetic modifications and circRNA, and the significant role they may play in the progression of CRC, and also outlines the potential applications to diagnosis and treatment, and the research direction in the future.

Cite this article

Tian PENG , Leiming XU . Crosstalk between epigenetic modification and circRNA in colorectal cancer: recent advances[J]. Journal of Shanghai Jiao Tong University (Medical Science), 2023 , 43(2) : 237 -243 . DOI: 10.3969/j.issn.1674-8115.2023.02.014

References

1 GOEL A, BOLAND C R. Epigenetics of colorectal cancer[J]. Gastroenterology, 2012, 143(6): 1442-1460.e1.
2 CAVALLI G, HEARD E. Advances in epigenetics link genetics to the environment and disease[J]. Nature, 2019, 571(7766): 489-499.
3 ZHANG Z, WANG Q, ZHANG M M, et al. Comprehensive analysis of the transcriptome-wide m6A methylome in colorectal cancer by MeRIP sequencing[J]. Epigenetics, 2021, 16(4): 425-435.
4 ANASTASIADOU E, JACOB L S, SLACK F J. Non-coding RNA networks in cancer[J]. Nat Rev Cancer, 2018, 18(1): 5-18.
5 HAO S H, CONG L, QU R F, et al. Emerging roles of circular RNAs in colorectal cancer[J]. Onco Targets Ther, 2019, 12: 4765-4777.
6 GUO Y X, GUO Y Y, CHEN C, et al. Circ3823 contributes to growth, metastasis and angiogenesis of colorectal cancer: involvement of miR-30c-5p/TCF7 axis[J]. Mol Cancer, 2021, 20(1): 93.
7 LIU X, LIU Y Z, LIU Z, et al. CircMYH9 drives colorectal cancer growth by regulating serine metabolism and redox homeostasis in a p53-dependent manner[J]. Mol Cancer, 2021, 20(1): 114.
8 CHEN L Y, WANG L, REN Y X, et al. The circular RNA circ-ERBIN promotes growth and metastasis of colorectal cancer by miR-125a-5p and miR-138-5p/4EBP-1 mediated cap-independent HIF-1α translation[J]. Mol Cancer, 2020, 19(1): 164.
9 JIANG T, WANG H Y, LIU L Y, et al. CircIL4R activates the PI3K/AKT signaling pathway via the miR-761/TRIM29/PHLPP1 axis and promotes proliferation and metastasis in colorectal cancer[J]. Mol Cancer, 2021, 20(1): 167.
10 WANG J Q, ZHANG Y, SONG H, et al. The circular RNA circSPARC enhances the migration and proliferation of colorectal cancer by regulating the JAK/STAT pathway[J]. Mol Cancer, 2021, 20(1): 81.
11 ESTELLER M, PANDOLFI P P. The epitranscriptome of noncoding RNAs in cancer[J]. Cancer Discov, 2017, 7(4): 359-368.
12 CHEN C, GUO Y Y, GUO Y X, et al. m6A modification in non-coding RNA: the role in cancer drug resistance[J]. Front Oncol, 2021, 11: 746789.
13 FU Y, DOMINISSINI D, RECHAVI G, et al. Gene expression regulation mediated through reversible m?A RNA methylation[J]. Nat Rev Genet, 2014, 15(5): 293-306.
14 ZACCARA S, RIES R J, JAFFREY S R. Reading, writing and erasing mRNA methylation[J]. Nat Rev Mol Cell Biol, 2019, 20(10): 608-624.
15 LI T, HU P S, ZUO Z X, et al. METTL3 facilitates tumor progression via an m6A-IGF2BP2-dependent mechanism in colorectal carcinoma[J]. Mol Cancer, 2019, 18(1): 112.
16 NOMBELA P, MIGUEL-LóPEZ B, BLANCO S. The role of m6A, m5C and Ψ RNA modifications in cancer: novel therapeutic opportunities[J]. Mol Cancer, 2021, 20(1): 18.
17 ZHOU C, MOLINIE B, DANESHVAR K, et al. Genome-wide maps of m6A circRNAs identify widespread and cell-type-specific methylation patterns that are distinct from mRNAs[J]. Cell Rep, 2017, 20(9): 2262-2276.
18 YANG Y, FAN X J, MAO M W, et al. Extensive translation of circular RNAs driven by N6-methyladenosine[J]. Cell Res, 2017, 27(5): 626-641.
19 MENG E Q, DENG J, JIANG R Q, et al. CircRNA-encoded peptides or proteins as new players in digestive system neoplasms[J]. Front Oncol, 2022, 12: 944159.
20 LI Y, CHEN B, ZHAO J J, et al. HNRNPL circularizes ARHGAP35 to produce an oncogenic protein[J]. Adv Sci (Weinh), 2021, 8(13): 2001701.
21 KONSAVAGE W M Jr, KYLER S L, RENNOLL S A, et al. Wnt/β- catenin signaling regulates Yes-associated protein (YAP) gene expression in colorectal carcinoma cells[J]. J Biol Chem, 2012, 287(15): 11730-11739.
22 CHEN C, YUAN W T, ZHOU Q B, et al. N6-methyladenosine-induced circ1662 promotes metastasis of colorectal cancer by accelerating YAP1 nuclear localization[J]. Theranostics, 2021, 11(9): 4298-4315.
23 WANG Q, CHEN C, DING Q Q, et al. METTL3-mediated m6A modification of HDGF mRNA promotes gastric cancer progression and has prognostic significance[J]. Gut, 2020, 69(7): 1193-1205.
24 VO J N, CIESLIK M, ZHANG Y J, et al. The landscape of circular RNA in cancer[J]. Cell, 2019, 176(4): 869-881.e13.
25 SHIMA H, MATSUMOTO M, ISHIGAMI Y, et al. S-adeno-sylmethionine synthesis is regulated by selective N6-adenosine methylation and mRNA degradation involving METTL16 and YTHDC1[J]. Cell Rep, 2017, 21(12): 3354-3363.
26 PARK O H, HA H, LEE Y, et al. Endoribonucleolytic cleavage of m6A-containing RNAs by RNase P/MRP complex[J]. Mol Cell, 2019, 74(3): 494-507.e8.
27 KRISTENSEN L S, JAKOBSEN T, HAGER H, et al. The emerging roles of circRNAs in cancer and oncology[J]. Nat Rev Clin Oncol, 2022, 19(3): 188-206.
28 LIN C W, MA M, ZHANG Y, et al. The N6-methyladenosine modification of circALG1 promotes the metastasis of colorectal cancer mediated by the miR-342-5p/PGF signalling pathway[J]. Mol Cancer, 2022, 21(1): 80.
29 CHEN R X, CHEN X, XIA L P, et al. N6-methyladenosine modification of circNSUN2 facilitates cytoplasmic export and stabilizes HMGA2 to promote colorectal liver metastasis[J]. Nat Commun, 2019, 10(1): 4695.
30 BAI Y, YANG C X, WU R L, et al. YTHDF1 regulates tumorigenicity and cancer stem cell-like activity in human colorectal carcinoma[J]. Front Oncol, 2019, 9: 332.
31 JIANG Z P, HOU Z H, LIU W, et al. Circular RNA protein tyrosine kinase 2 (circPTK2) promotes colorectal cancer proliferation, migration, invasion and chemoresistance[J]. Bioengineered, 2022, 13(1): 810-823.
32 YAO B, ZHANG Q L, YANG Z, et al. CircEZH2/miR-133b/IGF2BP2 aggravates colorectal cancer progression via enhancing the stability of m6A-modified CREB1 mRNA[J]. Mol Cancer, 2022, 21(1): 140.
33 LAO V V, GRADY W M. Epigenetics and colorectal cancer[J]. Nat Rev Gastroenterol Hepatol, 2011, 8(12): 686-700.
34 MOORE L D, LE T, FAN G P. DNA methylation and its basic function[J]. Neuropsychopharmacology, 2013, 38(1): 23-38.
35 JONES P A, BAYLIN S B. The fundamental role of epigenetic events in cancer[J]. Nat Rev Genet, 2002, 3(6): 415-428.
36 FERREIRA H J, DAVALOS V, DE MOURA M C, et al. Circular RNA CpG island hypermethylation-associated silencing in human cancer[J]. Oncotarget, 2018, 9(49): 29208-29219.
37 MAO G L, ZHOU B, XU W Q, et al. Hsa_circ_0040809 regulates colorectal cancer development by upregulating methyltransferase DNMT1 via targeting miR-515-5p[J]. J Gene Med, 2021, 23(12): e3388.
38 HAN G D, WEI Z J, CUI H B, et al. NUSAP1 gene silencing inhibits cell proliferation, migration and invasion through inhibiting DNMT1 gene expression in human colorectal cancer[J]. Exp Cell Res, 2018, 367(2): 216-221.
39 GU Y, CI C, ZHANG X D, et al. Prediction of circRNAs based on the DNA methylation-mediated feature sponge function in breast cancer[J]. Front Bioeng Biotechnol, 2019, 7: 365.
40 CHEN N F, ZHAO G, YAN X, et al. A novel FLI1 exonic circular RNA promotes metastasis in breast cancer by coordinately regulating TET1 and DNMT1[J]. Genome Biol, 2018, 19(1): 218.
41 ZHANG B G, YANG S, WANG J P. Circ_0084615 is an oncogenic circular RNA in colorectal cancer and promotes DNMT3A expression via repressing miR-599[J]. Pathol Res Pract, 2021, 224: 153494.
42 LUGER K, M?DER A W, RICHMOND R K, et al. Crystal structure of the nucleosome core particle at 2.8 ? resolution[J]. Nature, 1997, 389(6648): 251-260.
43 CZERMIN B, MELFI R, MCCABE D, et al. Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites[J]. Cell, 2002, 111(2): 185-196.
44 WANG Y, XUAN Z Q, WANG B C, et al. Hsa_circ_0071589 promotes carcinogenesis via the miR-600/EZH2 axis in colorectal cancer[J]. Biomedecine Pharmacother, 2018, 102: 1188-1194.
45 CHEN L Y, ZHI Z, WANG L, et al. NSD2 circular RNA promotes metastasis of colorectal cancer by targeting miR-199b-5p-mediated DDR1 and JAG1 signalling[J]. J Pathol, 2019, 248(1): 103-115.
46 HOLDT L M, KOHLMAIER A, TEUPSER D. Circular RNAs as therapeutic agents and targets[J]. Front Physiol, 2018, 9: 1262.
47 GE L C, ZHANG N, CHEN Z J, et al. Level of N6-methyladenosine in peripheral blood RNA: a novel predictive biomarker for gastric cancer[J]. Clin Chem, 2020, 66(2): 342-351.
48 BELTRáN-GARCíA J, OSCA-VERDEGAL R, MENA-MOLLá S, et al. Epigenetic IVD tests for personalized precision medicine in cancer[J]. Front Genet, 2019, 10: 621.
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