Review

Role of isocitrate dehydrogenase 1 mutation-mediated D-2-hydroxyglutarate metabolic reprogramming in tumor immunoregulation and progress in related drug development

  • YANG Quanjun ,
  • BAI Dingyuan ,
  • ZHOU Yuxuan ,
  • BAI Lu ,
  • GUO Cheng
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  • Department of Pharmacy, Shanghai Sixth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200233, China
YANG Quanjun, E-mail: myotime@sjtu.edu.cn.

Received date: 2025-04-24

  Accepted date: 2025-07-03

  Online published: 2025-09-30

Supported by

National Natural Science Foundation of China(82272925);“Two-hundred Talents” Program of Shanghai Jiao Tong University School of Medicine(20240815)

Abstract

Mutations in isocitrate dehydrogenase 1 (IDH1) can abnormally produce the oncometabolite D-2-hydroxyglutarate (D2HG), which in turn remodels the tumor immune microenvironment. In recent years, it has become a key target in the research on the interaction between tumor metabolism and immunity. D2HG competitively inhibits endogenous α-ketoglutarate-dependent dioxygenases, leading to DNA histone hypermethylation and cell differentiation arrest, thus promoting tumorigenesis, development, metastasis, and drug resistance. Meanwhile, D2HG suppresses T-cell function, promotes myeloid cell expansion and macrophage polarization, weakens immune surveillance, and creates an immunosuppressive state that affects the response to immunotherapy. In various tumors, such as glioma, acute myeloid leukemia, and cholangiocarcinoma, IDH1 mutations exhibit heterogeneity and different prognostic characteristics. Currently, small-molecule inhibitors targeting IDH1 mutations, such as ivosidenib and vorasidenib, can partially reverse immunosuppression by reducing D2HG levels and have shown certain efficacy in clinical trials. However, these inhibitors face challenges including efficacy differences, drug resistance, and safety concerns. Combination therapies with IDH1 inhibitors aim to synergistically reverse the metabolic-epigenetic-immune triple-suppression network and enhance the anti-tumor effects, attracting extensive attention. This article reviews the tumor immune regulatory network mediated by IDH1-mutation-induced D2HG metabolism and comprehensively summarizes progress in related drug development, providing new references and ideas for tumor prevention and treatment.

Cite this article

YANG Quanjun , BAI Dingyuan , ZHOU Yuxuan , BAI Lu , GUO Cheng . Role of isocitrate dehydrogenase 1 mutation-mediated D-2-hydroxyglutarate metabolic reprogramming in tumor immunoregulation and progress in related drug development[J]. Journal of Shanghai Jiao Tong University (Medical Science), 2025 , 45(9) : 1239 -1248 . DOI: 10.3969/j.issn.1674-8115.2025.09.016

References

[1] CLARK O, YEN K, MELLINGHOFF I K. Molecular pathways: isocitrate dehydrogenase mutations in cancer[J]. Clin Cancer Res, 2016, 22(8): 1837-1842.
[2] HAN S E, LIU Y, CAI S J, et al. IDH mutation in glioma: molecular mechanisms and potential therapeutic targets[J]. Br J Cancer, 2020, 122(11): 1580-1589.
[3] MEDEIROS B C, FATHI A T, DINARDO C D, et al. Isocitrate dehydrogenase mutations in myeloid malignancies[J]. Leukemia, 2017, 31(2): 272-281.
[4] SAHA S K, PARACHONIAK C A, GHANTA K S, et al. Mutant IDH inhibits HNF-4α to block hepatocyte differentiation and promote biliary cancer[J]. Nature, 2014, 513(7516): 110-114.
[5] GROSS S, CAIRNS R A, MINDEN M D, et al. Cancer-associated metabolite 2-hydroxyglutarate accumulates in acute myelogenous leukemia with isocitrate dehydrogenase 1 and 2 mutations[J]. J Exp Med, 2010, 207(2): 339-344.
[6] YANG H, YE D, GUAN K L, et al. IDH1 and IDH2 mutations in tumorigenesis: mechanistic insights and clinical perspectives[J]. Clin Cancer Res, 2012, 18(20): 5562-5571.
[7] R?VER L K, GEVENSLEBEN H, DIETRICH J, et al. PD-1 (PDCD1) promoter methylation is a prognostic factor in patients with diffuse lower-grade gliomas harboring isocitrate dehydrogenase (IDH) mutations[J]. EBioMedicine, 2018, 28: 97-104.
[8] DEJAEGHER J, SOLIE L, HUNIN Z, et al. DNA methylation based glioblastoma subclassification is related to tumoral T-cell infiltration and patient survival[J]. Neuro Oncol, 2021, 23(2): 240-250.
[9] XU X, ZHAO J Y, XU Z, et al. Structures of human cytosolic NADP-dependent isocitrate dehydrogenase reveal a novel self-regulatory mechanism of activity[J]. J Biol Chem, 2004, 279(32): 33946-33957.
[10] DANG L, WHITE D W, GROSS S, et al. Cancer-associated IDH1 mutations produce 2-hydroxyglutarate[J]. Nature, 2009, 462: 739-744.
[11] COHEN A L, HOLMEN S L, COLMAN H. IDH1 and IDH2 mutations in gliomas[J]. Curr Neurol Neurosci Rep, 2013, 13(5): 345.
[12] MARCUCCI G, MAHARRY K, WU Y Z, et al. IDH1 and IDH2 gene mutations identify novel molecular subsets within de novo cytogenetically normal acute myeloid leukemia: a Cancer and Leukemia Group B study[J]. J Clin Oncol, 2010, 28(14): 2348-2355.
[13] MARTíNEZ-JIMéNEZ F, MUI?OS F, SENTíS I, et al. A compendium of mutational cancer driver genes[J]. Nat Rev Cancer, 2020, 20(10): 555-572.
[14] FLAVAHAN W A, DRIER Y, LIAU B B, et al. Insulator dysfunction and oncogene activation in IDH mutant gliomas[J]. Nature, 2016, 529(7584): 110-114.
[15] TURCAN S, ROHLE D, GOENKA A, et al. IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype[J]. Nature, 2012, 483(7390): 479-483.
[16] SULKOWSKI P L, CORSO C D, ROBINSON N D, et al. 2-Hydroxyglutarate produced by neomorphic IDH mutations suppresses homologous recombination and induces PARP inhibitor sensitivity[J]. Sci Transl Med, 2017, 9(375): eaal2463.
[17] GELMAN S J, NASER F, MAHIEU N G, et al. Consumption of NADPH for 2-HG synthesis increases pentose phosphate pathway flux and sensitizes cells to oxidative stress[J]. Cell Rep, 2018, 22(2): 512-522.
[18] METALLO C M, GAMEIRO P A, BELL E L, et al. Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia[J]. Nature, 2011, 481(7381): 380-384.
[19] THOMAS D, WU M H, NAKAUCHI Y, et al. Dysregulated lipid synthesis by oncogenic IDH1 mutation is a targetable synthetic lethal vulnerability[J]. Cancer Discov, 2023, 13(2): 496-515.
[20] SASAKI M, KNOBBE C B, ITSUMI M, et al. D-2-hydroxyglutarate produced by mutant IDH1 perturbs collagen maturation and basement membrane function[J]. Genes Dev, 2012, 26(18): 2038-2049.
[21] DA SILVA R, UNO M, MARIE S K, et al. LOX expression and functional analysis in astrocytomas and impact of IDH1 mutation[J]. PLoS One, 2015, 10(3): e0119781.
[22] ALDAPE K, ZADEH G, MANSOURI S, et al. Glioblastoma: pathology, molecular mechanisms and markers[J]. Acta Neuropathol, 2015, 129(6): 829-848.
[23] MELLINGHOFF I K, VAN DEN BENT M J, BLUMENTHAL D T, et al. Vorasidenib in IDH1- or IDH2-mutant low-grade glioma[J]. N Engl J Med, 2023, 389(7): 589-601.
[24] GREEN C L, EVANS C M, HILLS R K, et al. The prognostic significance of IDH1 mutations in younger adult patients with acute myeloid leukemia is dependent on FLT3/ITD status[J]. Blood, 2010, 116(15): 2779-2782.
[25] DINARDO C D, STEIN A S, STEIN E M, et al. Mutant isocitrate dehydrogenase 1 inhibitor ivosidenib in combination with azacitidine for newly diagnosed acute myeloid leukemia[J]. J Clin Oncol, 2021, 39(1): 57-65.
[26] DINARDO C D, STEIN E M, DE BOTTON S, et al. Durable remissions with ivosidenib in IDH1-mutated relapsed or refractory AML[J]. N Engl J Med, 2018, 378(25): 2386-2398.
[27] KELLEY R K, BRIDGEWATER J, GORES G J, et al. Systemic therapies for intrahepatic cholangiocarcinoma[J]. J Hepatol, 2020, 72(2): 353-363.
[28] LAVACCHI D, CALIMAN E, ROSSI G, et al. Ivosidenib in IDH1-mutated cholangiocarcinoma: clinical evaluation and future directions[J]. Pharmacol Ther, 2022, 237: 108170.
[29] MüLLER C, FRANKE S, REISL?NDER T, et al. Sustained clinical response to ivosidenib in previously treated patients with advanced intrahepatic cholangiocarcinoma harboring an IDH1 R132 mutation: two case reports[J]. Case Rep Oncol, 2024, 17(1): 753-762.
[30] LUK I S, BRIDGWATER C M, YU A, et al. SRC inhibition enables formation of a growth suppressive MAGI1-PP2A complex in isocitrate dehydrogenase-mutant cholangiocarcinoma[J]. Sci Transl Med, 2024, 16(747): eadj7685.
[31] CHEN C B, ZHAO M, TIAN A X, et al. Aberrant activation of Wnt/β?catenin signaling drives proliferation of bone sarcoma cells[J]. Oncotarget, 2015, 6(19): 17570-17583.
[32] TARPEY P S, BEHJATI S, COOKE S L, et al. Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma[J]. Nat Genet, 2013, 45(8): 923-926.
[33] TAP W D, VILLALOBOS V M, COTE G M, et al. Phase I study of the mutant IDH1 inhibitor ivosidenib: safety and clinical activity in patients with advanced chondrosarcoma[J]. J Clin Oncol, 2020, 38(15): 1693-1701.
[34] GU Y, YANG R S, YANG Y, et al. IDH1 mutation contributes to myeloid dysplasia in mice by disturbing heme biosynthesis and erythropoiesis[J]. Blood, 2021, 137(7): 945-958.
[35] BONAVITACOLA J, CAFFREY M, JEREMIAS S, et al. FDA Approves Ivosidenib in IDH1-Mutated MDS [J]. American Journal of Managed Care, 2023, 29(9): SP854-SP855.
[36] SAMUELI B, AL-AHMADIE H, CHEN Y B, et al. Histopathologic and molecular characterization of IDH-mutant prostatic adenocarcinoma[J]. Mod Pathol, 2025, 38(1): 100616.
[37] HUANG J L, TSENG L H, PARINI V, et al. IDH1 and IDH2 mutations in colorectal cancers[J]. Am J Clin Pathol, 2021, 156(5): 777-786.
[38] MURUGAN A K, QASEM E, AL-HINDI H, et al. Analysis of ALK, IDH1, IDH2 and MMP8 somatic mutations in differentiated thyroid cancers[J]. Mol Clin Oncol, 2021, 15(4): 210.
[39] KADIYALA P, CARNEY S V, GAUSS J C, et al. Inhibition of 2-hydroxyglutarate elicits metabolic reprogramming and mutant IDH1 glioma immunity in mice[J]. J Clin Invest, 2021, 131(4): e139542.
[40] MELLINGHOFF I K, LU M, WEN P Y, et al. Vorasidenib and ivosidenib in IDH1-mutant low-grade glioma: a randomized, perioperative phase 1 trial[J]. Nat Med, 2023, 29(3): 615-622.
[41] NOTARANGELO G, SPINELLI J B, PEREZ E M, et al. Oncometabolite d-2HG alters T cell metabolism to impair CD8+ T cell function[J]. Science, 2022, 377(6614): 1519-1529.
[42] MONTESINOS P, RECHER C, VIVES S, et al. Ivosidenib and azacitidine in IDH1-mutated acute myeloid leukemia[J]. N Engl J Med, 2022, 386(16): 1519-1531.
[43] BHANSALI R S, PRATZ K W, LAI C. Recent advances in targeted therapies in acute myeloid leukemia[J]. J Hematol Oncol, 2023, 16(1): 29.
[44] BOTTOMLY D, LONG N, SCHULTZ A R, et al. Integrative analysis of drug response and clinical outcome in acute myeloid leukemia[J]. Cancer Cell, 2022, 40(8): 850-864.e9.
[45] GRETEN T F, SCHWABE R, BARDEESY N, et al. Immunology and immunotherapy of cholangiocarcinoma[J]. Nat Rev Gastroenterol Hepatol, 2023, 20(6): 349-365.
[46] RAGGI C, TADDEI M L, RAE C, et al. Metabolic reprogramming in cholangiocarcinoma[J]. J Hepatol, 2022, 77(3): 849-864.
[47] VARACHEV V, SHEKHTMAN A, GUSKOV D, et al. Diagnostics of IDH1/2 mutations in intracranial chondroid tumors: comparison of molecular genetic methods and immunohistochemistry[J]. Diagnostics (Basel), 2024, 14(2): 200.
[48] ROCK A, ALI S N, CHOW W A. Systemic therapy for chondrosarcoma[J]. Curr Treat Options Oncol, 2022, 23(2): 199-209.
[49] GREENBERG P L, STONE R M, AL-KALI A, et al. Myelodysplastic Syndromes, Version 3.2022 Featured Updates to the NCCN Guidelines [J]. Journal of the National Comprehensive Cancer Network, 2022, 20(2): 107-117.
[50] DINARDO C D, ROBOZ G J, WATTS J M, et al. Final phase 1 substudy results of ivosidenib for patients with mutant IDH1 relapsed/refractory myelodysplastic syndrome[J]. Blood Adv, 2024, 8(15): 4209-4220.
[51] CSIZMAR C M, SALIBA A N, SWISHER E M, et al. PARP inhibitors and myeloid neoplasms: a double-edged sword[J]. Cancers (Basel), 2021, 13(24): 6385.
[52] GONTHIER K, WEIDMANN C, BERTHIAUME L, et al. Isocitrate dehydrogenase 1 sustains a hybrid cytoplasmic-mitochondrial tricarboxylic acid cycle that can be targeted for therapeutic purposes in prostate cancer[J]. Mol Oncol, 2023, 17(10): 2109-2125.
[53] WHITEHALL V J, DUMENIL T D, MCKEONE D M, et al. Isocitrate dehydrogenase 1 R132C mutation occurs exclusively in microsatellite stable colorectal cancers with the CpG island methylator phenotype[J]. Epigenetics, 2014, 9(11): 1454-1460.
[54] SEOK J Y, ASTVATSATURYAN K, PERALTA-VENTURINA M, et al. TROP-2, 5hmC, and IDH1 expression in anaplastic thyroid carcinoma[J]. Int J Surg Pathol, 2021, 29(4): 368-377.
[55] ZHANG L J, SORENSEN M D, KRISTENSEN B W, et al. D-2-hydroxyglutarate is an intercellular mediator in IDH-mutant gliomas inhibiting complement and T cells[J]. Clin Cancer Res, 2018, 24(21): 5381-5391.
[56] B?TTCHER M, RENNER K, BERGER R, et al. D-2-hydroxyglutarate interferes with HIF-1α stability skewing T-cell metabolism towards oxidative phosphorylation and impairing Th17 polarization[J]. Oncoimmunology, 2018, 7(7): e1445454.
[57] WU M J, KONDO H, KAMMULA A V, et al. Mutant IDH1 inhibition induces dsDNA sensing to activate tumor immunity[J]. Science, 2024, 385(6705): eadl6173.
[58] YANG Q J, HAO J, CHI M Y, et al. D2HGDH-mediated D2HG catabolism enhances the anti-tumor activities of CAR-T cells in an immunosuppressive microenvironment[J]. Mol Ther, 2022, 30(3): 1188-1200.
[59] JIANG T, ZHANG H W, WEN Y P, et al. 5-Aza-2-deoxycytidine alleviates the progression of primary biliary cholangitis by suppressing the FoxP3 methylation and promoting the Treg/Th17 balance[J]. Int Immunopharmacol, 2021, 96: 107820.
[60] DE GOEDE K E, HARBER K J, GORKI F S, et al. D-2-Hydroxyglutarate is an anti-inflammatory immunometabolite that accumulates in macrophages after TLR4 activation[J]. Biochim Biophys Acta Mol Basis Dis, 2022, 1868(9): 166427.
[61] POPOVICI-MULLER J, LEMIEUX R M, ARTIN E, et al. Discovery of AG-120 (ivosidenib): a first-in-class mutant IDH1 inhibitor for the treatment of IDH1 mutant cancers[J]. ACS Med Chem Lett, 2018, 9(4): 300-305.
[62] LIANG Q M, WANG B L, ZOU F M, et al. Structure-based discovery of IHMT-IDH1-053 as a potent irreversible IDH1 mutant selective inhibitor[J]. Eur J Med Chem, 2023, 256: 115411.
[63] XIAO K, ZHANG Z, WU Y, et al. Discovery of HMPL-306 (ranosidenib), a new potent and selective dual inhibitor of mutant IDH1 and 2 in clinical development for cancer treatment[J]. ACS Med Chem Lett, 2025, 16(3): 454-463.
[64] ZHU A X, MACARULLA T, JAVLE M M, et al. Final overall survival efficacy results of ivosidenib for patients with advanced cholangiocarcinoma with IDH1 mutation: the phase 3 randomized clinical ClarIDHy trial[J]. JAMA Oncol, 2021, 7(11): 1669-1677.
[65] WATTS J M, BAER M R, YANG J, et al. Olutasidenib alone or with azacitidine in IDH1-mutated acute myeloid leukaemia and myelodysplastic syndrome: phase 1 results of a phase 1/2 trial[J]. Lancet Haematol, 2023, 10(1): e46-e58.
[66] DE BOTTON S, FENAUX P, YEE K R, et al. Olutasidenib (FT-2102) induces durable complete remissions in patients with relapsed or refractory IDH1-mutated AML[J]. Blood Adv, 2023, 7(13): 3117-3127.
[67] CORTES J E, ROBOZ G J, BAER M R, et al. Olutasidenib in combination with azacitidine induces durable complete remissions in patients with relapsed or refractory mIDH1 acute myeloid leukemia: a multicohort open-label phase 1/2 trial[J]. J Hematol Oncol, 2025, 18(1): 7.
[68] NATSUME A, ARAKAWA Y, NARITA Y, et al. The first-in-human phase I study of a brain-penetrant mutant IDH1 inhibitor DS-1001 in patients with recurrent or progressive IDH1-mutant gliomas[J]. Neuro Oncol, 2023, 25(2): 326-336.
[69] ROHLE D, POPOVICI-MULLER J, PALASKAS N, et al. An inhibitor of mutant IDH1 delays growth and promotes differentiation of glioma cells[J]. Science, 2013, 340(6132): 626-630.
[70] DAVIS M I, GROSS S, SHEN M, et al. Biochemical, cellular, and biophysical characterization of a potent inhibitor of mutant isocitrate dehydrogenase IDH1[J]. J Biol Chem, 2014, 289(20): 13717-13725.
[71] GERECKE C, SCHUMACHER F, BERNDZEN A, et al. Vitamin C in combination with inhibition of mutant IDH1 synergistically activates TET enzymes and epigenetically modulates gene silencing in colon cancer cells[J]. Epigenetics, 2020, 15(3): 307-322.
[72] HU L J, WEI X D, ZHAO W L, et al. HMPL-306 in relapsed or refractory IDH1- and/or IDH2-mutated acute myeloid leukemia: a phase 1 study[J]. Med, 2025, 6(6): 100575.
[73] WICK A, B?HR O, SCHULER M, et al. Phase I assessment of safety and therapeutic activity of BAY1436032 in patients with IDH1-mutant solid tumors[J]. Clin Cancer Res, 2021, 27(10): 2723-2733.
[74] HEUSER M, PALMISIANO N, MANTZARIS I, et al. Safety and efficacy of BAY1436032 in IDH1-mutant AML: phase I study results[J]. Leukemia, 2020, 34(11): 2903-2913.
[75] PAUFF J M, PAPADOPOULOS K P, JANKU F, et al. A phase I study of LY3410738, a first-in-class covalent inhibitor of mutant IDH1 in cholangiocarcinoma and other advanced solid tumors[J]. J Clin Oncol, 2021, 39(3_suppl): TPS350.
[76] SALAMA V, BROOKS N, SKWARSKA A, et al. Abstract 6417: ly3410738, a novel inhibitor of mutant IDH1 is more effective than Ivosidenib and potentiates antileukemic activity of standard chemotherapy in preclinical models of acute myeloid leukemia (AML)[J]. Cancer Res, 2020, 80(16_Supplement): 6417.
[77] DINARDO C D, HOCHHAUS A, FRATTINI M G, et al. A phase 1 study of IDH305 in patients with IDH1R132-mutant acute myeloid leukemia or myelodysplastic syndrome[J]. J Cancer Res Clin Oncol, 2023, 149(3): 1145-1158.
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