Journal of Shanghai Jiao Tong University (Medical Science) ›› 2023, Vol. 43 ›› Issue (7): 931-938.doi: 10.3969/j.issn.1674-8115.2023.07.016
• Review • Previous Articles
WANG Qing(), HAN Xiao, ZHANG Xiaobo()
Received:
2023-02-03
Accepted:
2023-05-25
Online:
2023-07-28
Published:
2023-07-28
Contact:
ZHANG Xiaobo
E-mail:wq141269@163.com;zhangxiaobo0307@163.com
Supported by:
CLC Number:
WANG Qing, HAN Xiao, ZHANG Xiaobo. Research progress of immune response regulated by epigenetic modification in pneumonia[J]. Journal of Shanghai Jiao Tong University (Medical Science), 2023, 43(7): 931-938.
Add to citation manager EndNote|Ris|BibTeX
URL: https://xuebao.shsmu.edu.cn/EN/10.3969/j.issn.1674-8115.2023.07.016
1 | GBD 2019 LRI Collaborators. Age-sex differences in the global burden of lower respiratory infections and risk factors, 1990-2019: results from the Global Burden of Disease Study 2019[J]. Lancet Infect Dis, 2022, 22(11): 1626-1647. |
2 | Word Health Organization. Pneumonia[EB/OL]. [2023-01-10]. https://data.unicef.org/topic/child-health/pneumonia/. |
3 | PERIN J, MULICK A, YEUNG D, et al. Global, regional, and national causes of under-5 mortality in 2000-19: an updated systematic analysis with implications for the Sustainable Development Goals[J]. Lancet Child Adolesc Health, 2022, 6(2): 106-115. |
4 | SANGLA F, LEGOUIS D, MARTI P E, et al. One year after ICU admission for severe community-acquired pneumonia of bacterial, viral or unidentified etiology. What are the outcomes?[J]. PLoS One, 2020, 15(12): e0243762. |
5 | FERREIRA-COIMBRA J, SARDA C, RELLO J. Burden of community-acquired pneumonia and unmet clinical needs[J]. Adv Ther, 2020, 37(4): 1302-1318. |
6 | DROZ N, HSIA Y, ELLIS S, et al. Bacterial pathogens and resistance causing community acquired paediatric bloodstream infections in low-and middle-income countries: a systematic review and meta-analysis[J]. Antimicrob Resist Infect Control, 2019, 8: 207. |
7 | TORRES A, CILLONIZ C, NIEDERMAN M S, et al. Pneumonia[J]. Nat Rev Dis Primers, 2021, 7(1): 25. |
8 | GROUSD J A, RICH H E, ALCORN J F. Host-pathogen interactions in gram-positive bacterial pneumonia[J]. Clin Microbiol Rev, 2019, 32(3): e00107-e00118. |
9 | CHOUDHURI S. From Waddington′s epigenetic landscape to small noncoding RNA: some important milestones in the history of epigenetics research[J]. Toxicol Mech Methods, 2011, 21(4): 252-274. |
10 | LIU C, XU J H, CHEN Y H, et al. Characterization of genome-wide H3K27ac profiles reveals a distinct PM2.5-associated histone modification signature[J]. Environ Health, 2015, 14: 65. |
11 | ZHAO L F, ZHANG M, BAI L R, et al. Real-world PM2.5 exposure induces pathological injury and DNA damage associated with miRNAs and DNA methylation alteration in rat lungs[J]. Environ Sci Pollut Res Int, 2022, 29(19): 28788-28803. |
12 | ZHANG Q, CAO X T. Epigenetic remodeling in innate immunity and inflammation[J]. Annu Rev Immunol, 2021, 39: 279-311. |
13 | YIN Y M, MORGUNOVA E, JOLMA A, et al. Impact of cytosine methylation on DNA binding specificities of human transcription factors[J]. Science, 2017, 356(6337): eaaj2239. |
14 | ZHONG Z H, FENG S H, DUTTKE S H, et al. DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis[J]. Proc Natl Acad Sci U S A, 2021, 118(5): e2023347118. |
15 | DEKKERS K F, NEELE A E, JUKEMA J W, et al. Human monocyte-to-macrophage differentiation involves highly localized gain and loss of DNA methylation at transcription factor binding sites[J]. Epigenetics Chromatin, 2019, 12(1): 34. |
16 | XIA Y Y, HE F, WU X Y, et al. GABA transporter sustains IL-1β production in macrophages[J]. Sci Adv, 2021, 7(15): eabe9274. |
17 | SINGER B D, MOCK J R, AGGARWAL N R, et al. Regulatory T cell DNA methyltransferase inhibition accelerates resolution of lung inflammation[J]. Am J Respir Cell Mol Biol, 2015, 52(5): 641-652. |
18 | MCGRATH-MORROW S A, NDEH R, HELMIN K A, et al. DNA methylation regulates the neonatal CD4+ T-cell response to pneumonia in mice[J]. J Biol Chem, 2018, 293(30): 11772-11783. |
19 | BANNISTER S, KIM B, DOMÍNGUEZ-ANDRÉS J, et al. Neonatal BCG vaccination is associated with a long-term DNA methylation signature in circulating monocytes[J]. Sci Adv, 2022, 8(31): eabn4002. |
20 | HEIKKINEN A, BOLLEPALLI S, OLLIKAINEN M. The potential of DNA methylation as a biomarker for obesity and smoking[J]. J Intern Med, 2022, 292(3): 390-408. |
21 | AMPOMAH P B, CAI B S, SUKKA S R, et al. Macrophages use apoptotic cell-derived methionine and DNMT3A during efferocytosis to promote tissue resolution[J]. Nat Metab, 2022, 4(4): 444-457. |
22 | COLE E, BROWN T A, PINKERTON K E, et al. Perinatal exposure to environmental tobacco smoke is associated with changes in DNA methylation that precede the adult onset of lung disease in a mouse model[J]. Inhal Toxicol, 2017, 29(10): 435-442. |
23 | CHEN H, LI G, CHAN Y L, et al. Maternal E-cigarette exposure in mice alters DNA methylation and lung cytokine expression in offspring[J]. Am J Respir Cell Mol Biol, 2018, 58(3): 366-377. |
24 | MILLÁN-ZAMBRANO G, BURTON A, BANNISTER A J, et al. Histone post-translational modifications - cause and consequence of genome function[J]. Nat Rev Genet, 2022, 23(9): 563-580. |
25 | DILLON S C, ZHANG X, TRIEVEL R C, et al. The SET-domain protein superfamily: protein lysine methyltransferases[J]. Genome Biol, 2005, 6(8): 227. |
26 | LI Y, LI G H, ZHANG L, et al. G9a promotes inflammation in Streptococcus pneumoniae induced pneumonia mice by stimulating M1 macrophage polarization and H3K9me2 methylation in FOXP1 promoter region[J]. Ann Transl Med, 2022, 10(10): 583. |
27 | WU S Q, TIAN X C, MAO Q, et al. Azithromycin attenuates wheezing after pulmonary inflammation through inhibiting histone H3K27me3 hypermethylation mediated by EZH2[J]. Clin Epigenetics, 2023, 15(1): 12. |
28 | NITSCH S, ZORRO SHAHIDIAN L, SCHNEIDER R. Histone acylations and chromatin dynamics: concepts, challenges, and links to metabolism[J]. EMBO Rep, 2021, 22(7): e52774. |
29 | NAGESH P T, HUSSAIN M, GALVIN H D, et al. Histone deacetylase 2 is a component of influenza A virus-induced host antiviral response[J]. Front Microbiol, 2017, 8: 1315. |
30 | MULLICAN S E, GADDIS C A, ALENGHAT T, et al. Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation[J]. Genes Dev, 2011, 25(23): 2480-2488. |
31 | YAO Y, LIU Q P, ADRIANTO I, et al. Histone deacetylase 3 controls lung alveolar macrophage development and homeostasis[J]. Nat Commun, 2020, 11(1): 3822. |
32 | FENG Q Q, SU Z L, SONG S Y, et al. Histone deacetylase inhibitors suppress RSV infection and alleviate virus-induced airway inflammation[J]. Int J Mol Med, 2016, 38(3): 812-822. |
33 | DAI J P, GU L M, SU Y, et al. Inhibition of curcumin on influenza A virus infection and influenzal pneumonia via oxidative stress, TLR2/4, p38/JNK MAPK and NF-κB pathways[J]. Int Immunopharmacol, 2018, 54: 177-187. |
34 | LIU L, ZHOU X M, SHETTY S, et al. HDAC6 inhibition blocks inflammatory signaling and caspase-1 activation in LPS-induced acute lung injury[J]. Toxicol Appl Pharmacol, 2019, 370: 178-183. |
35 | FABIAN M R, SONENBERG N, FILIPOWICZ W. Regulation of mRNA translation and stability by microRNAs[J]. Annu Rev Biochem, 2010, 79: 351-379. |
36 | JIANG K F, YANG J, GUO S, et al. Peripheral circulating exosome-mediated delivery of miR-155 as a novel mechanism for acute lung inflammation[J]. Mol Ther, 2019, 27(10): 1758-1771. |
37 | ZHANG D, LEE H, WANG X Y, et al. A potential role of microvesicle-containing miR-223/142 in lung inflammation[J]. Thorax, 2019, 74(9): 865-874. |
38 | ZHANG X, HUANG F, YANG D Y, et al. Identification of miRNA-mRNA crosstalk in respiratory syncytial virus- (RSV-) associated pediatric pneumonia through integrated miRNAome and transcriptome analysis[J]. Mediators Inflamm, 2020, 2020: 8919534. |
39 | GONZALO-CALVO D D, BENÍTEZ I D, PINILLA L, et al. Circulating microRNA profiles predict the severity of COVID-19 in hospitalized patients[J]. Transl Res, 2021, 236: 147-159. |
40 | GARCÍA-HIDALGO M C, GONZÁLEZ J, BENÍTEZ I D, et al. Identification of circulating microRNA profiles associated with pulmonary function and radiologic features in survivors of SARS-CoV-2-induced ARDS[J]. Emerg Microbes Infect, 2022, 11(1): 1537-1549. |
41 | SUN Q Y, HAO Q Y, PRASANTH K V. Nuclear long noncoding RNAs: key regulators of gene expression[J]. Trends Genet, 2018, 34(2): 142-157. |
42 | RINN J L, CHANG H Y. Long noncoding RNAs: molecular modalities to organismal functions[J]. Annu Rev Biochem, 2020, 89: 283-308. |
43 | LIU S, LIU J Q, YANG X, et al. Cis-acting lnc-Cxcl2 restrains neutrophil-mediated lung inflammation by inhibiting epithelial cell CXCL2 expression in virus infection[J]. Proc Natl Acad Sci U S A, 2021, 118(41): e2108276118. |
44 | CHI X W, DING B C, ZHANG L J, et al. lncRNA GAS5 promotes M1 macrophage polarization via miR-455-5p/SOCS3 pathway in childhood pneumonia[J]. J Cell Physiol, 2019, 234(8): 13242-13251. |
45 | GU H Y, ZHU Y F, ZHOU Y, et al. LncRNA MALAT1 affects Mycoplasma pneumoniae pneumonia via NF-κB regulation[J]. Front Cell Dev Biol, 2020, 8: 563693. |
46 | MEMCZAK S, JENS M, ELEFSINIOTI A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency[J]. Nature, 2013, 495(7441): 333-338. |
47 | ZHAO T, ZHENG Y L, HAO D Z, et al. Blood circRNAs as biomarkers for the diagnosis of community-acquired pneumonia[J]. J Cell Biochem, 2019, 120(10): 16483-16494. |
48 | KHAN H N, BRANDS X, AUFIERO S, et al. The circular RNA landscape in specific peripheral blood mononuclear cells of critically ill patients with sepsis[J]. Crit Care, 2020, 24(1): 423. |
49 | HANSEN T B, JENSEN T I, CLAUSEN B H, et al. Natural RNA circles function as efficient microRNA sponges[J]. Nature, 2013, 495(7441): 384-388. |
50 | ARORA S, SINGH P, DOHARE R, et al. Unravelling host-pathogen interactions: ceRNA network in SARS-CoV-2 infection (COVID-19)[J]. Gene, 2020, 762: 145057. |
51 | QU Z Y, MENG F, SHI J Z, et al. A novel intronic circular RNA antagonizes influenza virus by absorbing a microRNA that degrades CREBBP and accelerating IFN-β production[J]. mBio, 2021, 12(4): e0101721. |
52 | BARBAGALLO D, PALERMO C I, BARBAGALLO C, et al. Competing endogenous RNA network mediated by circ_3205 in SARS-CoV-2 infected cells[J]. Cell Mol Life Sci, 2022, 79(2): 75. |
53 | ROUNDTREE I A, EVANS M E, PAN T, et al. Dynamic RNA modifications in gene expression regulation[J]. Cell, 2017, 169(7): 1187-1200. |
54 | AN Y Y, DUAN H. The role of m6A RNA methylation in cancer metabolism[J]. Mol Cancer, 2022, 21(1): 14. |
55 | TONG J Y, WANG X F, LIU Y B, et al. Pooled CRISPR screening identifies m6A as a positive regulator of macrophage activation[J]. Sci Adv, 2021, 7(18): eabd4742. |
56 | LIU Y H, LIU Z J, TANG H, et al. The N 6-methyladenosine (m6A)-forming enzyme METTL3 facilitates M1 macrophage polarization through the methylation of STAT1 mRNA[J]. Am J Physiol Cell Physiol, 2019, 317(4): C762-C775. |
57 | YU R Q, LI Q M, FENG Z H, et al. m6A reader YTHDF2 regulates LPS-induced inflammatory response[J]. Int J Mol Sci, 2019, 20(6): 1323. |
58 | LU M J, ZHANG Z J, XUE M G, et al. N 6-methyladenosine modification enables viral RNA to escape recognition by RNA sensor RIG-I[J]. Nat Microbiol, 2020, 5(4): 584-598. |
59 | LU M J, XUE M G, WANG H T, et al. Nonsegmented negative-sense RNA viruses utilize N 6-methyladenosine (m6A) as a common strategy to evade host innate immunity[J]. J Virol, 2021, 95(9): e01939-e01920. |
[1] | LIN Jiayu, QIN Jiejie, JIANG Lingxi. Progress in metabolism of the immune cells in tumor microenvironment [J]. Journal of Shanghai Jiao Tong University (Medical Science), 2022, 42(8): 1122-1130. |
[2] | JIANG Chunyu, GUO Xiaokui, QIN Jinhong. Research advances in CRISPR-Cas systems and anti-CRISPR protein families in Klebsiella pneumoniae [J]. Journal of Shanghai Jiao Tong University (Medical Science), 2022, 42(12): 1757-1765. |
[3] | Li-sha LI, Jian-hui LI, Bin HE, Nan-nan WU, Tong-yu ZHU, Xiao-kui GUO, Zheng-hong CHEN. Clinical application and effect of phage on the treatment of pulmonary infection by pan-drug resistant Klebsiella pneumoniae [J]. JOURNAL OF SHANGHAI JIAOTONG UNIVERSITY (MEDICAL SCIENCE), 2021, 41(9): 1272-1276. |
[4] | Dan WU, Li-ping GE. Research progress of DNA methylation in gestational diabetes mellitus [J]. JOURNAL OF SHANGHAI JIAOTONG UNIVERSITY (MEDICAL SCIENCE), 2021, 41(8): 1120-1124. |
[5] | Li ZHU, Yun LI, Hui-qin XI, Wei-jun WANG, Fei CHEN, Zhan-ting LU, Ling XIA, Meng-dian ZHAN, Tian-yao ZHANG. Airway management in a critically ill patient with novel coronavirus pneumonia undergoing extracorporeal membrane oxygenation [J]. JOURNAL OF SHANGHAI JIAOTONG UNIVERSITY (MEDICAL SCIENCE), 2021, 41(3): 406-408. |
[6] | ZOU Chen1, 2, XU Run-hao1, 3, ZHANG Hong2, MA Zhan2, CHEN Li2, ZHANG Jie3, LI Min3, ZHANG Shu-lin1. Potential roles of small metabolites in the differential diagnosis between lung cancer and pneumonia [J]. JOURNAL OF SHANGHAI JIAOTONG UNIVERSITY (MEDICAL SCIENCE), 2020, 40(8): 1041-1047. |
[7] | ZHU Wei-jun1, MA Jin1, CUI Wen-bin2, YUAN Su-wei1. New grey correlation and degree of structure variation analysis of hospitalization cost of childhood pneumonia [J]. JOURNAL OF SHANGHAI JIAOTONG UNIVERSITY (MEDICAL SCIENCE), 2020, 40(5): 666-670. |
[8] | GUAN Hong-yan, LIU Jing-xian, LIU Ying. Virulence genes of Klebsiella pneumoniae isolated blood cultures and clinical characteristics of the patients [J]. , 2020, 40(2): 235-. |
[9] | ZHOU Han, YANG Xiao-sheng, LIAO Chen-long, ZHANG Wen-chuan. Analysis on characteristics of diabetic foot ulceration-related genes and immune cells [J]. JOURNAL OF SHANGHAI JIAOTONG UNIVERSITY (MEDICAL SCIENCE), 2020, 40(10): 1354-1359. |
[10] | Lü Lin, SHI Xin, GUO Xiao-kui, QIN Jin-hong. Isolation, biological characteristics and genomic safety assessment of drug-resistant Klebsiella pneumoniae phage JD902 [J]. , 2019, 39(12): 1389-. |
[11] | WU Guang-xi, SHI Xue-yin, HE Bin. Development of vaccines for prevention of Klebsiella pneumoniae [J]. , 2018, 38(4): 458-. |
[12] | SHI Xiao-dong, DAI Yu-jun, WANG Yue-ying. Role of DNA methyltransferase 3A in hematological malignancies#br# [J]. , 2017, 37(9): 1276-. |
[13] | LIU Yang, ZHENG Dan-dan, HAN Yi-chao, SHI Wei-yang, DAI Er-kuan, LI Min, ZHENG Bing. High-risk factors of infection of multidrug resistance Klebsiella pneumonia and analysis of therapeutic effects#br# [J]. , 2017, 37(7): 973-. |
[14] | ZHI Ye, LUO Ting-ting, WANG Rui, FENG Xi-jia, LIU Ke, SHI Chen-kun, WANG Lu-lu, HU Fu-pin, HE Ping. Characterization and genomic analysis of bacteriophage SH-Kp152234 infecting extensively drug-resistant Klebsiella pneumonia [J]. , 2017, 37(3): 273-. |
[15] | TIAN Li-jun, WANG Xiao-li, XIAO Shu-zhen, SUN Jing-yong, LIU Jia-lin, QU Hong-ping . Epidemiological distribution, virulent genes and clinical characteristics of hypermucoviscous Klebsiella pneumonia in a Hospital [J]. , 2017, 37(1): 43-. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||