
Journal of Shanghai Jiao Tong University (Medical Science) ›› 2026, Vol. 46 ›› Issue (9): 1272-1282.doi: 10.3969/j.issn.1674-8115.2026.09.012
• Review • Previous Articles
He Zhilin1, Xu Lin1, Li Yan1, Wang Linzheng1, Chen Wei2(
), Li Yanbin3(
)
Received:2026-01-09
Accepted:2026-05-11
Online:2026-09-28
Published:2026-09-28
Contact:
Chen Wei, Li Yanbin
E-mail:weichen_outlook@163.com;13864006933@163.com
Supported by:CLC Number:
He Zhilin, Xu Lin, Li Yan, Wang Linzheng, Chen Wei, Li Yanbin. Research progress in the roles and mechanisms of lysine crotonylation in diseases[J]. Journal of Shanghai Jiao Tong University (Medical Science), 2026,(9): 1272-1282.
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URL: https://xuebao.shsmu.edu.cn/EN/10.3969/j.issn.1674-8115.2026.09.012
| System | Disease | Enzyme | Regulation | Reference |
|---|---|---|---|---|
| Nervous system | Neural development | HDAC1‒3 | Downregulation | [ |
| Neuropathic pain | p300 | Upregulation | [ | |
| Memory impairment | p300 | Upregulation | [ | |
| Cardiovascular system | Arrhythmia | SIRT1 | Downregulation | [ |
| Metabolic disease | Browning of white adipocytes | Cr-CoA | Upregulation | [ |
| SIRT3 | Downregulation | [ | ||
| Diabetic ulcer | GCN5 | Upregulation | [ | |
| Diabetic kidney disease | ACSS2 | Downregulation | [ | |
| p300 | Downregulation | [ | ||
| Cr-CoA | Downregulation | [ | ||
| Digestive system | Colorectal cancer | KAT2B | Upregulation | [ |
| CBP | Upregulation | [ | ||
| SIRT2 | Downregulation | [ | ||
| Metastatic colorectal cancer | SIRT3 | Downregulation | [ | |
| Hepatocellular carcinoma | HDAC6 | Downregulation | [ | |
| ACOX2 | Downregulation | [ | ||
| Cr-CoA | Downregulation | [ | ||
| SIRT2 | Downregulation | [ | ||
| Colitis | ACSS2 | Downregulation | [ | |
| Cr-CoA | Downregulation | [ | ||
| Hepatic fibrosis | HDAC1, 3 | Upregulation | [ | |
| CDYL | Upregulation | [ | ||
| Metabolic dysfunction-associated fatty liver disease | SIRT7 | Upregulation | [ | |
| PCAF | Downregulation | [ | ||
| HDAC1, 2 | Upregulation | [ | ||
| KAT8 | Downregulation | [ | ||
| Pancreatic cancer | CBP/p300 | Downregulation | [ | |
HDAC1, 3 ACOX1 | Upregulation Downregulation | [ [ | ||
| Cr-CoA | Upregulation | [ | ||
| Urinary system | Renal fibrosis | Cr-CoA | Downregulation | [ |
| ACSS2 | Upregulation | [ | ||
| Fluoride-induced renal injury | p300 | Downregulation | [ | |
| SIRT1 | Downregulation | [ | ||
| HDAC2, 3 | Downregulation | [ | ||
| Polycystic kidney disease | CDYL | Downregulation | [ | |
| Cr-CoA | Downregulation | [ | ||
| Autoimmune disease | Psoriasis | CBP | Downregulation | [ |
| HDAC2 | Upregulation | [ |
Tab 1 Effects of Kcr modification on diseases affecting different systems
| System | Disease | Enzyme | Regulation | Reference |
|---|---|---|---|---|
| Nervous system | Neural development | HDAC1‒3 | Downregulation | [ |
| Neuropathic pain | p300 | Upregulation | [ | |
| Memory impairment | p300 | Upregulation | [ | |
| Cardiovascular system | Arrhythmia | SIRT1 | Downregulation | [ |
| Metabolic disease | Browning of white adipocytes | Cr-CoA | Upregulation | [ |
| SIRT3 | Downregulation | [ | ||
| Diabetic ulcer | GCN5 | Upregulation | [ | |
| Diabetic kidney disease | ACSS2 | Downregulation | [ | |
| p300 | Downregulation | [ | ||
| Cr-CoA | Downregulation | [ | ||
| Digestive system | Colorectal cancer | KAT2B | Upregulation | [ |
| CBP | Upregulation | [ | ||
| SIRT2 | Downregulation | [ | ||
| Metastatic colorectal cancer | SIRT3 | Downregulation | [ | |
| Hepatocellular carcinoma | HDAC6 | Downregulation | [ | |
| ACOX2 | Downregulation | [ | ||
| Cr-CoA | Downregulation | [ | ||
| SIRT2 | Downregulation | [ | ||
| Colitis | ACSS2 | Downregulation | [ | |
| Cr-CoA | Downregulation | [ | ||
| Hepatic fibrosis | HDAC1, 3 | Upregulation | [ | |
| CDYL | Upregulation | [ | ||
| Metabolic dysfunction-associated fatty liver disease | SIRT7 | Upregulation | [ | |
| PCAF | Downregulation | [ | ||
| HDAC1, 2 | Upregulation | [ | ||
| KAT8 | Downregulation | [ | ||
| Pancreatic cancer | CBP/p300 | Downregulation | [ | |
HDAC1, 3 ACOX1 | Upregulation Downregulation | [ [ | ||
| Cr-CoA | Upregulation | [ | ||
| Urinary system | Renal fibrosis | Cr-CoA | Downregulation | [ |
| ACSS2 | Upregulation | [ | ||
| Fluoride-induced renal injury | p300 | Downregulation | [ | |
| SIRT1 | Downregulation | [ | ||
| HDAC2, 3 | Downregulation | [ | ||
| Polycystic kidney disease | CDYL | Downregulation | [ | |
| Cr-CoA | Downregulation | [ | ||
| Autoimmune disease | Psoriasis | CBP | Downregulation | [ |
| HDAC2 | Upregulation | [ |
| [1] | Sabari B R, Tang Z Y, Huang H, et al. Intracellular crotonyl-CoA stimulates transcription through p300-catalyzed histone crotonylation[J]. Mol Cell, 2015, 58(2): 203-215. |
| [2] | Hou J Y, Zhou L, Li J L, et al. Emerging roles of non-histone protein crotonylation in biomedicine[J]. Cell Biosci, 2021, 11(1): 101. |
| [3] | Jenuwein T, Allis C D. Translating the histone code[J]. Science, 2001, 293(5532): 1074-1080. |
| [4] | Wei W, Mao A Q, Tang B, et al. Large-scale identification of protein crotonylation reveals its role in multiple cellular functions[J]. J Proteome Res, 2017, 16(4): 1743-1752. |
| [5] | Tan M J, Luo H, Lee S, et al. Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification[J]. Cell, 2011, 146(6): 1016-1028. |
| [6] | Wang Y F, Wan Y T, Qi Q R, et al. Echs1-mediated histone crotonylation facilitates zygotic genome activation and expression of repetitive elements in early mammalian embryos[J]. Nat Commun, 2025, 16(1): 5630. |
| [7] | Xu W Z, Wan J H, Zhan J, et al. Global profiling of crotonylation on non-histone proteins[J]. Cell Res, 2017, 27(7): 946-949. |
| [8] | Yang P, Qin Y Y, Zeng L S, et al. Crotonylation and disease: current progress and future perspectives[J]. Biomed Pharmacother, 2023, 165: 115108. |
| [9] | Chen Q J, Yang B H, Liu X C, et al. Histone acetyltransferases CBP/p300 in tumorigenesis and CBP/p300 inhibitors as promising novel anticancer agents[J]. Theranostics, 2022, 12(11): 4935-4948. |
| [10] | Huang H, Wang D L, Zhao Y M. Quantitative crotonylome analysis expands the roles of p300 in the regulation of lysine crotonylation pathway[J]. Proteomics, 2018, 18(15): e1700230. |
| [11] | Sheng C, Li T, Lin H, et al. Hepatic CBP/p300 orchestrate amino acid-driven gluconeogenesis through histone crotonylation[J]. Adv Sci (Weinh), 2025, 12(41): e07635. |
| [12] | Liu X G, Wei W, Liu Y T, et al. MOF as an evolutionarily conserved histone crotonyltransferase and transcriptional activation by histone acetyltransferase-deficient and crotonyltransferase-competent CBP/p300[J]. Cell Discov, 2017, 3: 17016. |
| [13] | Xiao Y H, Li W J, Yang H, et al. HBO1 is a versatile histone acyltransferase critical for promoter histone acylations[J]. Nucleic Acids Res, 2021, 49(14): 8037-8059. |
| [14] | Kollenstart L, de Groot A J L, Janssen G M C, et al. Gcn5 and Esa1 function as histone crotonyltransferases to regulate crotonylation-dependent transcription[J]. J Biol Chem, 2019, 294(52): 20122-20134. |
| [15] | Wei W, Liu X G, Chen J W, et al. Class Ⅰ histone deacetylases are major histone decrotonylases: evidence for critical and broad function of histone crotonylation in transcription[J]. Cell Res, 2017, 27(7): 898-915. |
| [16] | Madsen A S, Olsen C A. Profiling of substrates for zinc-dependent lysine deacylase enzymes: HDAC3 exhibits decrotonylase activity in vitro[J]. Angew Chem Int Ed, 2012, 51(36): 9083-9087. |
| [17] | Bao X C, Wang Y, Li X, et al. Identification of ‘erasers’ for lysine crotonylated histone marks using a chemical proteomics approach[J]. eLife, 2014, 3: e02999. |
| [18] | Yang J, He Z M, Chen C J, et al. Toxoplasma gondii infection inhibits histone crotonylation to regulate immune response of porcine alveolar macrophages[J]. Front Immunol, 2021, 12: 696061. |
| [19] | Zhang N, Song L M, Xu Y, et al. The decrotonylase FoSir5 facilitates mitochondrial metabolic state switching in conidial germination of Fusarium oxysporum[J]. eLife, 2021, 10: e75583. |
| [20] | Li Y Y, Sabari B R, Panchenko T, et al. Molecular coupling of histone crotonylation and active transcription by AF9 YEATS domain[J]. Mol Cell, 2016, 62(2): 181-193. |
| [21] | Zhao D, Guan H P, Zhao S, et al. YEATS2 is a selective histone crotonylation reader[J]. Cell Res, 2016, 26(5): 629-632. |
| [22] | Andrews F H, Shinsky S A, Shanle E K, et al. The Taf14 YEATS domain is a reader of histone crotonylation[J]. Nat Chem Biol, 2016, 12(6): 396-398. |
| [23] | Liu N, Konuma T, Sharma R, et al. Histone H3 lysine 27 crotonylation mediates gene transcriptional repression in chromatin[J]. Mol Cell, 2023, 83(13): 2206-2221.e11. |
| [24] | Flynn E M, Huang O W, Poy F, et al. A subset of human bromodomains recognizes butyryllysine and crotonyllysine histone peptide modifications[J]. Structure, 2015, 23(10): 1801-1814. |
| [25] | Xiong X Z, Panchenko T, Yang S, et al. Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2[J]. Nat Chem Biol, 2016, 12(12): 1111-1118. |
| [26] | Dai S K, Liu P P, Li X, et al. Dynamic profiling and functional interpretation of histone lysine crotonylation and lactylation during neural development[J]. Development, 2022, 149(14): dev200049. |
| [27] | Zou Y, Bai X H, Kong L C, et al. Involvement of histone lysine crotonylation in the regulation of nerve-injury-induced neuropathic pain[J]. Front Immunol, 2022, 13: 885685. |
| [28] | Li H C, Liu H X, Chen R, et al. Pyruvate dehydrogenase complex E1 subunit α crotonylation modulates cocaine-associated memory through hippocampal neuron activation[J]. Cell Rep, 2024, 43(8): 114529. |
| [29] | Weng Y, He T, Li M, et al. Microglial histone H3K18 crotonylation promotes STAT1 expression and induces cognitive deficit in Alzheimer disease[J]. Front Immunol, 2026, 17: 1744375. |
| [30] | Cai W Q, Xu D C, Zeng C, et al. Modulating lysine crotonylation in cardiomyocytes improves myocardial outcomes[J]. Circ Res, 2022, 131(5): 456-472. |
| [31] | Ju J, Wang K, Liu F, et al. Crotonylation of NAE1 modulates cardiac hypertrophy via gelsolin neddylation[J]. Circ Res, 2024, 135(8): 806-821. |
| [32] | Chen H X, Wang X C, Hou H T, et al. Lysine crotonylation of SERCA2a correlates to cardiac dysfunction and arrhythmia in Sirt1 cardiac-specific knockout mice[J]. Int J Biol Macromol, 2023, 242(Pt 4): 125151. |
| [33] | Liu S, Li H F, Li R, et al. Prevotella copri promotes white adipose browning and ameliorates adiposity[J]. Nat Commun, 2025, 17(1): 680. |
| [34] | Liu Y X, Liang J T, Liu Z H, et al. Dihydrolipoyl dehydrogenase promotes white adipocytes browning by activating the RAS/ERK pathway and undergoing crotonylation modification[J]. Int J Biol Macromol, 2024, 265(Pt 1): 130816. |
| [35] | Li F J, Ye H W, Li L L, et al. Histone lysine crotonylation accelerates ACSL4-mediated ferroptosis of keratinocytes via modulating autophagy in diabetic wound healing[J]. Pharmacol Res, 2025, 213: 107632. |
| [36] | He Y Q, Xie Y M, Zhou T T, et al. Sodium crotonate alleviates diabetic kidney disease partially via the histone crotonylation pathway[J]. Inflammation, 2025, 48(1): 254-275. |
| [37] | Hou J Y, Wang X L, Chang H J, et al. PTBP1 crotonylation promotes colorectal cancer progression through alternative splicing-mediated upregulation of the PKM2 gene[J]. J Transl Med, 2024, 22(1): 995. |
| [38] | Hou J Y, Cao J, Gao L J, et al. Upregulation of α enolase (ENO1) crotonylation in colorectal cancer and its promoting effect on cancer cell metastasis[J]. Biochem Biophys Res Commun, 2021, 578: 77-83. |
| [39] | Liao M J, Sun X L, Zheng W D, et al. LINC00922 decoys SIRT3 to facilitate the metastasis of colorectal cancer through up-regulation the H3K27 crotonylation of ETS1 promoter[J]. Mol Cancer, 2023, 22(1): 163. |
| [40] | Zhang D, Tang J, Xu Y H, et al. Global crotonylome reveals hypoxia-mediated lamin A crotonylation regulated by HDAC6 in liver cancer[J]. Cell Death Dis, 2022, 13(8): 717. |
| [41] | Zhang Y, Chen Y L, Zhang Z, et al. Acox2 is a regulator of lysine crotonylation that mediates hepatic metabolic homeostasis in mice[J]. Cell Death Dis, 2022, 13(3): 279. |
| [42] | Lao Y X, Cui X H, Xu Z, et al. Glutaryl-CoA dehydrogenase suppresses tumor progression and shapes an anti-tumor microenvironment in hepatocellular carcinoma[J]. J Hepatol, 2024, 81(5): 847-861. |
| [43] | Zhang X Y, Liu Z X, Zhang Y F, et al. SEPT2 crotonylation promotes metastasis and recurrence in hepatocellular carcinoma and is associated with poor survival[J]. Cell Biosci, 2023, 13(1): 63. |
| [44] | Yuan M, Chen S P, Lin Z S, et al. ACSS2-mediated histone H4 lysine 12 crotonylation (H4K12cr) alleviates colitis via enhancing transcription of CLDN7[J]. Adv Sci (Weinh), 2025, 12(30): e00461. |
| [45] | Chen X F, Ji S X. Sorafenib attenuates fibrotic hepatic injury through mediating lysine crotonylation[J]. Drug Des Devel Ther, 2022, 16: 2133-2144. |
| [46] | Liu S S, Ji Y, Wei L Y, et al. Crotonylation of IDH1 alleviates MASLD progression by enhancing the TCA cycle[J]. Nat Commun, 2025, 16(1): 7961. |
| [47] | Wang X L, He J H, Xie P, et al. Augmenter of liver regeneration crotonylation assists in mitochondria-ER contact to alleviate hepatic steatosis[J]. Cell Mol Gastroenterol Hepatol, 2025, 19(3): 101436. |
| [48] | Zheng Y, Zhu L, Qin Z Y, et al. Modulation of cellular metabolism by protein crotonylation regulates pancreatic cancer progression[J]. Cell Rep, 2023, 42(7): 112666. |
| [49] | Li H X, Li C, Ren M H, et al. Fasting-mimicking diet prevents pancreatic carcinogenesis via gut microbiota and metabolites[J]. J Agric Food Chem, 2024, 72(46): 25638-25647. |
| [50] | Li Y Z, Wang Z, Xu H Z, et al. Targeting the transmembrane cytokine co-receptor neuropilin-1 in distal tubules improves renal injury and fibrosis[J]. Nat Commun, 2024, 15(1): 5731. |
| [51] | Li L Z, Xiang T, Guo J J, et al. Inhibition of ACSS2-mediated histone crotonylation alleviates kidney fibrosis via IL-1β-dependent macrophage activation and tubular cell senescence[J]. Nat Commun, 2024, 15(1): 3200. |
| [52] | Zheng J W, Wang Q, Xu K J, et al. Fluoride induces immune-inflammatory disorder in the kidneys via histone lysine crotonylation in vivo[J]. Ecotoxicol Environ Saf, 2024, 288: 117385. |
| [53] | Dang L, Cao X Y, Zhang T Y, et al. Nuclear condensation of CDYL links histone crotonylation and cystogenesis in autosomal dominant polycystic kidney disease[J]. J Am Soc Nephrol, 2022, 33(9): 1708-1725. |
| [54] | He J, Lai T M, Zhou Z Y, et al. Multiomics profiling reveals the involvement of protein lactylation in nonhomologous end joining pathway conferring radioresistance in lung adenocarcinoma cell[J]. Sci Rep, 2025, 15(1): 24651. |
| [55] | Gan Q, Tang D E, Yan Q, et al. Differential expression study of lysine crotonylation and proteome for chronic obstructive pulmonary disease combined with type Ⅱ respiratory failure[J]. Can Respir J, 2021, 2021: 6652297. |
| [56] | Zeng H Y, Li D D, Dong J J, et al. Qualitative proteome-wide lysine crotonylation profiling reveals protein modification alteration in the leukocyte extravasation pathway in systemic lupus erythematosus[J]. ACS Omega, 2023, 8(47): 44905-44919. |
| [57] | Liang H F, Wang Y, Li J Q, et al. Crotonylation deficiency of S100A7 K49 promotes psoriatic keratinocyte proliferation through enhanced interaction with RAGE[J]. Sci Rep, 2025, 15(1): 14678. |
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