Journal of Shanghai Jiao Tong University (Medical Science) ›› 2024, Vol. 44 ›› Issue (12): 1514-1525.doi: 10.3969/j.issn.1674-8115.2024.12.004
• Basic research • Previous Articles
LIU Chenxi1,2(), HAN Lin3(), YANG Yi1,2, ZHOU Han1,2, LIU Yayun1,2(), SHENG Deqiao1,2()
Received:
2024-02-26
Accepted:
2024-08-05
Online:
2024-12-28
Published:
2024-12-28
Contact:
LIU Yayun,SHENG Deqiao
E-mail:381212026@qq.com;527982635@qq.com;liuyyctgu@ctgu.edu.cn;834309103@qq.com
Supported by:
CLC Number:
LIU Chenxi, HAN Lin, YANG Yi, ZHOU Han, LIU Yayun, SHENG Deqiao. GPR87 promotes invasion and migration through the RHO/ROCK pathway in non-small cell lung cancer[J]. Journal of Shanghai Jiao Tong University (Medical Science), 2024, 44(12): 1514-1525.
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URL: https://xuebao.shsmu.edu.cn/EN/10.3969/j.issn.1674-8115.2024.12.004
Name | Forward (5'→3') | Reverse (5'→3') |
---|---|---|
siRNA-GPR87-1 | GACCUUAGUUUCAAAGCUUdTdT | AAGCUUUGAAACUAAGGUCdTdT |
siRNA-GPR87-2 | GCAUCUUGCUGAAUGGUUUdTdT | AAACCAUUCAGCAAGAUGCdTdT |
NC-siRNA | UUCUCCGAACGUGUCACGUTT | ACGUGACACGUUCGGAGAATT |
Tab 1 Sequences of siRNA
Name | Forward (5'→3') | Reverse (5'→3') |
---|---|---|
siRNA-GPR87-1 | GACCUUAGUUUCAAAGCUUdTdT | AAGCUUUGAAACUAAGGUCdTdT |
siRNA-GPR87-2 | GCAUCUUGCUGAAUGGUUUdTdT | AAACCAUUCAGCAAGAUGCdTdT |
NC-siRNA | UUCUCCGAACGUGUCACGUTT | ACGUGACACGUUCGGAGAATT |
Gene | Forward (5'→3') | Reverse (5'→3') |
---|---|---|
GPR87 | GGAGGCGACATCAATGCAG | AAATGAAAGTAAAGAACGATTTTGTGT |
MMP2 | GCTGGAGACAAATTCTGGAGATACA | GTATCGAAGGCAGTGGAGAGGA |
MMP7 | GAGTGAGCTACAGTGGGAACA | CTATGACGCGGGAGTTTAACAT |
MMP9 | GCCACTACTGTGCCTTTGAGTC | CCCTCAGAGAATCGCCAGTACT |
E-cadherin | GCCTCCTGAAAAGAGAGTGGAAG | TGGCAGTGTCTCTCCAAATCCG |
N-cadherin | CCTCCAGAGTTTACTGCCATGAC | GTAGGATCTCCGCCACTGATTC |
vimentin | AGGCAAAGCAGGAGTCCACTGA | ATCTGGCGTTCCAGGGACTCAT |
snail | TGCCCTCAAGATGCACATCCGA | GGGACAGGAGAAGGGCTTCTC |
twist | GCCAGGTACATCGACTTCCTCT | TCCATCCTCCAGACCGAGAAGG |
RHOA | GCAGGTAGAGTTGGCTTTATGG | CTTGTGTGCTCATCATTCCGA |
RHOC | AAGACGAGCACACCAGGAGAGA | TTGGCTGAGCACTCAAGGTAGC |
ROCK1 | GAAACAGTGTTCCATGCTAGACG | GCCGCTTATTTGATTCCTGCTCC |
β-actin | CTGGAACGGTGAAGGTGACA | AAGGGACTTCCTGTAACAACGCA |
Tab 2 Sequences of primers for RT-qPCR
Gene | Forward (5'→3') | Reverse (5'→3') |
---|---|---|
GPR87 | GGAGGCGACATCAATGCAG | AAATGAAAGTAAAGAACGATTTTGTGT |
MMP2 | GCTGGAGACAAATTCTGGAGATACA | GTATCGAAGGCAGTGGAGAGGA |
MMP7 | GAGTGAGCTACAGTGGGAACA | CTATGACGCGGGAGTTTAACAT |
MMP9 | GCCACTACTGTGCCTTTGAGTC | CCCTCAGAGAATCGCCAGTACT |
E-cadherin | GCCTCCTGAAAAGAGAGTGGAAG | TGGCAGTGTCTCTCCAAATCCG |
N-cadherin | CCTCCAGAGTTTACTGCCATGAC | GTAGGATCTCCGCCACTGATTC |
vimentin | AGGCAAAGCAGGAGTCCACTGA | ATCTGGCGTTCCAGGGACTCAT |
snail | TGCCCTCAAGATGCACATCCGA | GGGACAGGAGAAGGGCTTCTC |
twist | GCCAGGTACATCGACTTCCTCT | TCCATCCTCCAGACCGAGAAGG |
RHOA | GCAGGTAGAGTTGGCTTTATGG | CTTGTGTGCTCATCATTCCGA |
RHOC | AAGACGAGCACACCAGGAGAGA | TTGGCTGAGCACTCAAGGTAGC |
ROCK1 | GAAACAGTGTTCCATGCTAGACG | GCCGCTTATTTGATTCCTGCTCC |
β-actin | CTGGAACGGTGAAGGTGACA | AAGGGACTTCCTGTAACAACGCA |
ID | Padj | P value | logFC | Gene symbol |
---|---|---|---|---|
219936_s_at | 3.47×10-5 | 2.32×10-7 | 2.43 | GPR87 |
212094_at | 1.24×10-5 | 4.70×10-8 | 2.36 | PEG10 |
209278_s_at | 1.63×10-2 | 1.53×10-3 | 2.22 | TFPI2 |
227506_at | 1.25×10-5 | 5.17×10-8 | 2.14 | SLC16A9 |
206023_at | 3.69×10-4 | 6.62×10-6 | 2.12 | NMU |
205048_s_at | 3.22×10-3 | 1.44×10-4 | 2.02 | PSPH |
220393_at | 7.91×10-3 | 5.37×10-4 | -2.05 | LGSN |
213432_at | 1.33×10-3 | 3.96×10-5 | -2.17 | MUC5B |
225728_at | 2.93×10-4 | 4.65×10-6 | -2.23 | SORBS2 |
203824_at | 1.38×10-3 | 4.19×10-5 | -2.25 | TSPAN8 |
Tab 3 DEGs associated with metastasis and prognosis in NSCLC
ID | Padj | P value | logFC | Gene symbol |
---|---|---|---|---|
219936_s_at | 3.47×10-5 | 2.32×10-7 | 2.43 | GPR87 |
212094_at | 1.24×10-5 | 4.70×10-8 | 2.36 | PEG10 |
209278_s_at | 1.63×10-2 | 1.53×10-3 | 2.22 | TFPI2 |
227506_at | 1.25×10-5 | 5.17×10-8 | 2.14 | SLC16A9 |
206023_at | 3.69×10-4 | 6.62×10-6 | 2.12 | NMU |
205048_s_at | 3.22×10-3 | 1.44×10-4 | 2.02 | PSPH |
220393_at | 7.91×10-3 | 5.37×10-4 | -2.05 | LGSN |
213432_at | 1.33×10-3 | 3.96×10-5 | -2.17 | MUC5B |
225728_at | 2.93×10-4 | 4.65×10-6 | -2.23 | SORBS2 |
203824_at | 1.38×10-3 | 4.19×10-5 | -2.25 | TSPAN8 |
Group | Case/n | Expression of GPR87/n | χ2 | P value | |
---|---|---|---|---|---|
High | Low | ||||
Tissue of NSCLC | 80 | 51 | 29 | 74.862 | <0.001 |
Adjacent non-tumor tissues | 80 | 0 | 80 |
Tab 4 Protein expression levels of GPR87 in NSCLC tumors and adjacent non-tumor tissues
Group | Case/n | Expression of GPR87/n | χ2 | P value | |
---|---|---|---|---|---|
High | Low | ||||
Tissue of NSCLC | 80 | 51 | 29 | 74.862 | <0.001 |
Adjacent non-tumor tissues | 80 | 0 | 80 |
Factor | Case/n | Expression of GPR87/n | χ2 | P value | |
---|---|---|---|---|---|
High | Low | ||||
Subgroup | 1.524 | 0.217 | |||
LUAD | 48 | 28 | 20 | ||
LUSC | 32 | 23 | 9 | ||
Age/year | 0.197 | 0.657 | |||
≥65 | 36 | 22 | 14 | ||
<65 | 44 | 29 | 15 | ||
Gender | 0.442 | 0.506 | |||
Male | 48 | 32 | 16 | ||
Female | 32 | 19 | 13 | ||
Smoking | 0.548 | 0.459 | |||
Yes/ever | 43 | 29 | 14 | ||
No | 37 | 22 | 15 | ||
Differentiation | 1.847 | 0.174 | |||
Good | 11 | 5 | 6 | ||
Middle/poor | 69 | 46 | 23 | ||
Stage | 10.498 | 0.001 | |||
Ⅰ/Ⅱ | 65 | 36 | 29 | ||
Ⅲ/Ⅳ | 15 | 15 | 0 | ||
Lymphatic metastasis | 5.485 | 0.019 | |||
No | 50 | 27 | 23 | ||
Yes | 30 | 24 | 6 |
Tab 5 The relevance of GPR87 expression to clinicopathological characteristics in NSCLC patients
Factor | Case/n | Expression of GPR87/n | χ2 | P value | |
---|---|---|---|---|---|
High | Low | ||||
Subgroup | 1.524 | 0.217 | |||
LUAD | 48 | 28 | 20 | ||
LUSC | 32 | 23 | 9 | ||
Age/year | 0.197 | 0.657 | |||
≥65 | 36 | 22 | 14 | ||
<65 | 44 | 29 | 15 | ||
Gender | 0.442 | 0.506 | |||
Male | 48 | 32 | 16 | ||
Female | 32 | 19 | 13 | ||
Smoking | 0.548 | 0.459 | |||
Yes/ever | 43 | 29 | 14 | ||
No | 37 | 22 | 15 | ||
Differentiation | 1.847 | 0.174 | |||
Good | 11 | 5 | 6 | ||
Middle/poor | 69 | 46 | 23 | ||
Stage | 10.498 | 0.001 | |||
Ⅰ/Ⅱ | 65 | 36 | 29 | ||
Ⅲ/Ⅳ | 15 | 15 | 0 | ||
Lymphatic metastasis | 5.485 | 0.019 | |||
No | 50 | 27 | 23 | ||
Yes | 30 | 24 | 6 |
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